Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
51
total RNA-seq
29
ATAC-seq
8
DNase-seq
4
Hi-C
4
pCHi-C
1
FAIRE-seq
Assay category
219
DNA binding
51
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
189
histone
189
histone modification
138
narrow histone mark
51
broad histone mark
30
control
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
221
bam
194
bigWig
174
bed narrowPeak
62
bigBed narrowPeak
49
tagAlign
37
tsv
8
bed broadPeak
8
bigBed broadPeak
7
fastq
6
bed bed3+
4
hic
3
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
316
Homo sapiens
Biosample type
267
tissue
41
primary cell
cell line
8
in vitro differentiated cells
Organ
98
brain
72
limb
50
blood vessel
50
vasculature
43
nerve
40
epithelium
28
artery
22
eye
21
vein
15
kidney
11
heart
11
pancreas
8
liver
6
connective tissue
4
gonad
4
ovary
3
adipose tissue
2
musculature of body
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
309
AMP
7
HPAP
Genome assembly (visualization)
197
hg19
194
GRCh38
Lab
309
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
11
inconsistent ontology term
1
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
316 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
heart
5
2
1
brain
5
1
+ See 95 more…
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
pancreatic alpha cell
5
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
+ See 3 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
See all biosamples
Download