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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
99
ChIP-seq
76
ATAC-seq
59
total RNA-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
165
Transcription
99
DNA binding
82
DNA accessibility
2
3D chromatin structure
Target of assay
47
histone
47
histone modification
37
control
27
broad histone mark
20
narrow histone mark
15
transcription factor
11
RNA binding protein
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
137
bed narrowPeak
117
bam
108
tsv
72
bigWig
64
xls
60
fastq
57
txt
45
bigBed narrowPeak
24
tagAlign
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
350
Homo sapiens
Biosample type
303
tissue
cell line
42
in vitro differentiated cells
6
primary cell
Organ
128
kidney
92
heart
55
pancreas
28
connective tissue
24
adipose tissue
6
blood vessel
6
epithelium
6
vasculature
4
liver
2
artery
Project
351
AMP
Genome assembly (visualization)
144
GRCh38
84
hg19
Lab
217
AMP-T2D consortium
128
Katalin Susztak, Upenn
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
Audit category:
1
inconsistent control read length
biosample_type!
cell line
month_released!
August, 2018
BIOSAMPLE
ASSAY
351 results
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Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
body of pancreas
33
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 15 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
pancreatic acinar cell
2
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