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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
57
total RNA-seq
21
ChIP-seq
6
snATAC-seq
2
Hi-C
Assay category
163
Transcription
80
DNA accessibility
21
DNA binding
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
376
May, 2021
273
October, 2019
266
August, 2021
232
August, 2017
199
June, 2019
185
February, 2023
166
July, 2018
163
February, 2021
160
May, 2022
147
May, 2020
120
May, 2019
91
November, 2017
80
April, 2019
80
July, 2019
73
September, 2018
59
September, 2020
53
October, 2018
48
March, 2020
47
April, 2018
47
September, 2023
44
November, 2019
40
May, 2024
39
February, 2018
31
December, 2017
22
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2018
14
May, 2023
11
September, 2017
7
August, 2020
7
December, 2018
7
January, 2019
6
January, 2018
5
December, 2019
5
March, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
106
tsv
87
bed narrowPeak
64
xls
57
txt
37
bam
20
bigWig
20
tagAlign
1
bedpe bed3+
1
hic
Organism
266
Homo sapiens
Biosample type
228
tissue
38
in vitro differentiated cells
cell line
Organ
128
kidney
92
heart
6
blood vessel
6
vasculature
connective tissue
4
epithelium
liver
2
artery
2
pancreas
1
adipose tissue
Project
266
AMP
Genome assembly (visualization)
94
GRCh38
30
hg19
Lab
136
AMP-T2D consortium
128
Katalin Susztak, Upenn
2
Bing Ren, UCSD
biosample_type!
cell line
organ_slims!
connective tissue
liver
target.investigated_as!
other context
BIOSAMPLE
ASSAY
266 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Hi-C
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
7
21
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