Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
104
ATAC-seq
57
ChIP-seq
1
Hi-C
Assay category
190
Transcription
104
DNA accessibility
57
DNA binding
1
3D chromatin structure
Target of assay
27
control
27
histone
27
histone modification
27
narrow histone mark
3
transcription factor
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
291
bam
263
bigWig
188
tsv
50
tagAlign
30
bed narrowPeak
8
fastq
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe
1
hic
Organism
352
Homo sapiens
Biosample type
205
tissue
147
primary cell
cell line
Organ
193
liver
7
spleen
5
pancreas
Project
307
AMP
45
T1D
Genome assembly (visualization)
266
hg19
212
GRCh38
Lab
302
AMP-T2D consortium
45
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
8
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
352 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
tissue
liver
143
50
spleen
7
islet of Langerhans
4
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
See all biosamples
Download