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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
total RNA-seq
51
single cell RNA-seq
4
MeRIP-seq
2
RNA microarray
1
ATAC-seq
1
DNase-seq
Assay category
180
Transcription
2
DNA accessibility
Target of assay
2
control
2
nucleotide modification
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
177
tsv
175
bam
174
bigWig
50
fastq
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
188
Homo sapiens
Biosample type
127
tissue
59
primary cell
cell line
2
in vitro differentiated cells
Organ
161
pancreas
39
epithelium
8
connective tissue
5
liver
3
kidney
Project
188
AMP
Genome assembly (visualization)
175
GRCh38
175
hg19
Lab
184
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
4
audit script error
biosample_type!
cell line
month_released!
August, 2018
BIOSAMPLE
ASSAY
188 results
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total RNA-seq
single cell RNA-seq
MeRIP-seq
RNA microarray
ATAC-seq
DNase-seq
tissue
islet of Langerhans
120
4
kidney
1
kidney interstitium
1
renal glomerulus
1
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
osteoblast
4
1
1
hepatocyte
5
pancreatic acinar cell
5
+ See 12 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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