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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
7
ATAC-seq
5
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
15
DNA binding
8
Transcription
7
DNA accessibility
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
619
February, 2021
403
August, 2017
373
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
214
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
88
November, 2017
76
April, 2019
73
September, 2018
65
October, 2018
59
September, 2020
52
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
39
February, 2018
35
May, 2024
25
February, 2020
22
October, 2017
19
April, 2020
18
November, 2018
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
19
bam
18
bigWig
16
fastq
14
tagAlign
11
bed narrowPeak
9
tsv
6
bigBed narrowPeak
4
bed broadPeak
Organism
32
Homo sapiens
Biosample type
25
tissue
5
primary cell
2
in vitro differentiated cells
Organ
16
brain
6
epithelium
5
liver
5
pancreas
3
kidney
1
adipose tissue
1
connective tissue
spleen
Project
32
AMP
Genome assembly (visualization)
18
GRCh38
17
hg19
Lab
31
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
audit script error
2
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
cell line
organ_slims!
spleen
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
RNA microarray
tissue
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
kidney
1
+ See 3 more…
primary cell
hepatocyte
5
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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