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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
409
total RNA-seq
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
5
ATAC-seq
3
snDrop-seq
1
pCHi-C
Assay category
427
Transcription
32
DNA accessibility
6
DNA methylation
Date released
469
February, 2021
411
August, 2017
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
191
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
423
tsv
411
bam
410
bigWig
45
fastq
6
csv
5
txt
4
bed bedgraph
1
bed bed3
1
bed bed3+
1
bed narrowPeak
Organism
469
Homo sapiens
Biosample type
395
tissue
cell line
48
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
bone element
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
1
liver
Project
424
AMP
45
HPAP
Genome assembly (visualization)
415
hg19
410
GRCh38
Lab
424
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
32
audit script error
18
inconsistent ontology term
biosample_type!
cell line
month_released!
January, 2019
May, 2021
organ_slims!
bone element
BIOSAMPLE
ASSAY
469 results
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Clear Filters
total RNA-seq
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
kidney (Cortex-Medulla)
1
+ See 3 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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