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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
27
snATAC-seq
18
single cell RNA-seq
7
ATAC-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
99
Transcription
34
DNA accessibility
6
DNA methylation
Date released
378
May, 2021
354
August, 2017
340
May, 2020
274
August, 2021
227
February, 2021
214
October, 2019
200
May, 2022
198
February, 2023
185
June, 2019
168
July, 2018
113
May, 2019
94
December, 2017
91
July, 2019
91
November, 2017
80
April, 2019
73
September, 2018
59
September, 2020
53
October, 2018
52
March, 2020
49
April, 2018
47
September, 2023
44
November, 2019
40
May, 2024
39
February, 2018
23
November, 2018
22
October, 2017
20
February, 2020
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2019
6
January, 2018
5
March, 2019
3
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
95
tsv
89
txt
85
bam
82
bigWig
45
fastq
6
csv
4
bed bedgraph
3
bed narrowPeak
1
bed bed3
1
bed bed3+
Organism
227
Homo sapiens
Biosample type
153
tissue
cell line
48
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
adipose tissue
150
bone element
8
kidney
8
skeleton
6
epithelium
limb
6
pancreas
1
liver
Project
182
AMP
45
HPAP
Genome assembly (visualization)
89
hg19
84
GRCh38
Lab
182
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
biosample_type!
cell line
organ_slims!
adipose tissue
limb
target.investigated_as!
other context
BIOSAMPLE
ASSAY
227 results
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Clear Filters
RNA microarray
total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
bone tissue
58
kidney
5
distal epiphysis
1
kidney (Cortex-Medulla)
1
+ See 4 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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