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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 467total RNA-seq
  • 84RNA microarray
  • 27snATAC-seq
  • 18single cell RNA-seq
  • 13ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 1pCHi-C
Assay category
  • 485Transcription
  • 40DNA accessibility
  • 6DNA methylation
Date released
  • 619February, 2021
  • 411August, 2017
  • 378May, 2021
  • 340May, 2020
  • 284October, 2019
  • 275August, 2021
  • 218June, 2019
  • 200May, 2022
  • 199February, 2023
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 94December, 2017
  • 91November, 2017
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 59September, 2020
  • 53March, 2020
  • 49April, 2018
  • 47September, 2023
  • 45November, 2019
  • 40May, 2024
  • 39February, 2018
  • 27November, 2018
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 10November, 2020
  • 7August, 2020
  • 7December, 2018
  • 7January, 2018
  • 7January, 2019
  • 5March, 2019
  • 4August, 2018
  • 3June, 2018
  • 3March, 2023
  • 3October, 2022
  • 1August, 2022
Available data
  • 481tsv
  • 477bam
  • 468bigWig
  • 89txt
  • 45fastq
  • 9bed narrowPeak
  • 6csv
  • 4bed bedgraph
  • 1bed bed3
  • 1bed bed3+
Organism
  • 619Homo sapiens
Biosample type
  • 545tissue
  • cell line
  • 48primary cell
  • 26in vitro differentiated cells
Organ
  • 455connective tissue
  • 386adipose tissue
  • 150bone element
  • 8kidney
  • 8skeleton
  • 6epithelium
  • 6limb
  • 6pancreas
  • 1liver
Project
  • 574AMP
  • 45HPAP
Genome assembly (visualization)
  • 481hg19
  • 476GRCh38
Lab
  • 574AMP-T2D consortium
  • 45Klaus Kaestner, Upenn
Audit category:
  • 102inconsistent ontology term
  • 32audit script error
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

619 results

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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue381
bone element84
bone tissue58
kidney5
visceral abdominal adipose tissue3
primary cell
Langerhans cell2712
pancreatic alpha cell6
osteoblast111
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)18
adipocyte44
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