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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
16
small RNA-seq
16
snATAC-seq
14
RRBS
11
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
61
Transcription
25
DNA methylation
24
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
619
February, 2021
385
August, 2017
378
May, 2021
340
May, 2020
280
October, 2019
275
August, 2021
199
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2019
6
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
80
bigWig
77
bam
61
tsv
21
bed bedMethyl
21
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
114
Homo sapiens
Biosample type
78
tissue
36
primary cell
Organ
25
heart
18
brain
18
connective tissue
14
pancreas
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
musculature of body
8
blood
8
bodily fluid
5
limb
3
artery
2
pericardium
1
eye
Project
98
AMP
16
T1D
Genome assembly (visualization)
86
hg19
74
GRCh38
Lab
98
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
biosample_type!
cell line
organ_slims!
musculature of body
ovary
BIOSAMPLE
ASSAY
114 results
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Clear Filters
total RNA-seq
small RNA-seq
snATAC-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
islet of Langerhans
4
1
omental fat pad
4
1
pancreas
4
1
right lobe of liver
2
2
1
+ See 23 more…
primary cell
peripheral blood mononuclear cell
8
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 19 more…
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