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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
26
total RNA-seq
19
ATAC-seq
8
DNase-seq
8
snATAC-seq
4
Hi-C
4
pCHi-C
1
FAIRE-seq
Assay category
219
DNA binding
36
DNA accessibility
26
Transcription
4
3D chromatin structure
Target of assay
189
histone
189
histone modification
138
narrow histone mark
51
broad histone mark
30
control
Date released
613
February, 2021
340
May, 2020
338
May, 2021
281
October, 2019
273
August, 2021
223
August, 2017
196
June, 2019
144
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
91
November, 2017
80
April, 2019
47
September, 2023
44
March, 2020
40
May, 2024
40
September, 2020
39
February, 2018
24
February, 2020
23
October, 2018
20
November, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2021
7
December, 2018
7
January, 2018
7
January, 2019
6
November, 2019
6
November, 2020
3
March, 2023
2
June, 2018
1
August, 2018
1
September, 2018
Available data
221
bam
187
bigWig
174
bed narrowPeak
62
bigBed narrowPeak
49
tagAlign
12
tsv
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
4
hic
3
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
289
Homo sapiens
Biosample type
239
tissue
42
primary cell
cell line
8
in vitro differentiated cells
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
33
epithelium
26
artery
21
eye
21
vein
15
kidney
pancreas
8
blood
8
bodily fluid
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
281
AMP
8
T1D
Genome assembly (visualization)
197
hg19
187
GRCh38
Lab
281
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
1
audit script error
biosample_type!
cell line
organ_slims!
pancreas
ureter
BIOSAMPLE
ASSAY
289 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
snATAC-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans
21
14
10
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
+ See 78 more…
primary cell
endothelial cell of umbilical vein
17
2
1
1
peripheral blood mononuclear cell
8
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
+ See 2 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
See all biosamples
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