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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
7
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
ATAC-seq
1
FAIRE-seq
Assay category
24
Transcription
3
3D chromatin structure
3
DNA methylation
2
DNA accessibility
Target of assay
3
control
Date released
386
February, 2021
91
November, 2017
87
October, 2019
57
August, 2017
32
July, 2019
31
June, 2019
28
May, 2019
23
October, 2018
17
October, 2017
14
February, 2020
3
March, 2020
3
November, 2018
2
February, 2023
1
August, 2018
1
August, 2021
1
January, 2018
1
May, 2023
1
November, 2019
Available data
29
bigWig
26
bam
24
tsv
3
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed narrowPeak
1
bigBed narrowPeak
Organism
32
Homo sapiens
Biosample type
22
tissue
10
primary cell
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
32
AMP
Genome assembly (visualization)
31
hg19
25
GRCh38
Lab
32
AMP-T2D consortium
biosample_type!
cell line
BIOSAMPLE
ASSAY
32 results
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total RNA-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
omental fat pad
4
1
subcutaneous adipose tissue
4
1
frontal cortex
1
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 5 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
+ See 3 more…
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