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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
DNase-seq
28
ChIP-seq
4
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
Assay category
111
DNA accessibility
28
DNA binding
4
Transcription
Target of assay
18
histone
18
histone modification
10
narrow histone mark
9
control
8
broad histone mark
3
RNA binding protein
3
transcription factor
2
nucleotide modification
Date released
611
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
269
October, 2019
200
May, 2022
199
February, 2023
168
July, 2018
147
August, 2021
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
91
November, 2017
76
October, 2018
73
September, 2018
59
September, 2020
57
April, 2019
53
March, 2020
49
April, 2018
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
11
September, 2017
10
November, 2020
7
August, 2020
7
December, 2018
7
December, 2019
7
January, 2018
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
1
May, 2023
Available data
143
bam
135
bigWig
132
bed narrowPeak
131
bigBed narrowPeak
110
bed bed3+
110
bed broadPeak
110
bigBed broadPeak
4
tsv
Organism
147
Homo sapiens
Biosample type
99
tissue
48
primary cell
cell line
Organ
kidney
43
musculature of body
35
heart
32
limb
30
brain
24
connective tissue
20
epithelium
18
ureter
8
pancreas
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
147
AMP
Genome assembly (visualization)
136
GRCh38
120
hg19
Lab
143
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
22
inconsistent ontology term
biosample_type!
cell line
month_released!
January, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
147 results
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Clear Filters
DNase-seq
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
muscle of leg
13
brain
12
islet of Langerhans
4
+ See 26 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
osteoblast
1
4
1
cardiac muscle cell
1
3
+ See 10 more…
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