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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
6
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
Assay category
104
DNA accessibility
62
Transcription
41
DNA methylation
6
DNA binding
1
3D chromatin structure
Target of assay
6
control
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
134
zippedFastqFolder
43
bed narrowPeak
35
bam
35
fastq
25
bigWig
7
txt
5
bigBed narrowPeak
3
bed bed3+
1
hic
Organism
212
Homo sapiens
Biosample type
140
primary cell
72
tissue
cell line
2
stem cell
Organ
115
pancreas
85
epithelium
40
liver
2
musculature of body
Project
134
HPAP
77
AMP
2
community
1
ITG
Genome assembly (visualization)
46
hg19
8
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
13
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
ITG
Audit category:
1
audit script error
biosample_type!
cell line
month_released!
June, 2019
BIOSAMPLE
ASSAY
214 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
24
25
pancreatic beta cell
15
16
pancreatic acinar cell
5
chondrocytes
1
tissue
liver
20
20
islet of Langerhans
18
6
6
skeletal muscle tissue
1
1
stem cell
SB Ad3.1
1
1
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