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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1197ChIP-seq
  • 1050total RNA-seq
  • 369ATAC-seq
  • 289single cell RNA-seq
  • 203DNase-seq
  • 87RNA microarray
  • 73snATAC-seq
  • 50pCHi-C
  • 23Hi-C
  • 23WGBS
  • 19RRBS
  • 16small RNA-seq
  • 5GRO-seq
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 1357Transcription
  • 1197DNA binding
  • 648DNA accessibility
  • 43DNA methylation
  • 233D chromatin structure
Target of assay
  • 847histone modification
  • 846histone
  • 431narrow histone mark
  • 414broad histone mark
  • 218control
  • 135transcription factor
  • 41RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 613February, 2021
  • 340May, 2020
  • 338May, 2021
  • 281October, 2019
  • 273August, 2021
  • 223August, 2017
  • 214June, 2019
  • 144February, 2023
  • 118May, 2019
  • 102July, 2019
  • 96May, 2022
  • 94December, 2017
  • 91November, 2017
  • 80April, 2019
  • 47September, 2023
  • 44March, 2020
  • 40May, 2024
  • 40September, 2020
  • 39February, 2018
  • 24February, 2020
  • 23October, 2018
  • 20November, 2018
  • 19April, 2020
  • 18October, 2017
  • 15May, 2023
  • 11July, 2018
  • 10April, 2018
  • 10December, 2019
  • 8January, 2021
  • 7December, 2018
  • 7January, 2018
  • 7January, 2019
  • 6November, 2019
  • 6November, 2020
  • 3March, 2023
  • 2June, 2018
  • 1August, 2018
  • 1September, 2018
Available data
  • 2184bam
  • 2080bigWig
  • 1220bed narrowPeak
  • 1098tsv
  • 603bigBed narrowPeak
  • 460fastq
  • 359tagAlign
  • 243bed bed3+
  • 243bed broadPeak
  • 220bigBed broadPeak
  • 154txt
  • 73zippedFastqFolder
  • 64xls
  • 29bed bedMethyl
  • 29bigBed bedMethyl
  • 15bedpe bed3+
  • 15hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 2ibed
  • 1tagAlign bed3+
  • 1tar
Organism
  • 3411Homo sapiens
Biosample type
  • 2272tissue
  • 742primary cell
  • cell line
  • 391in vitro differentiated cells
  • 10stem cell
Organ
  • pancreas
  • 684connective tissue
  • 491adipose tissue
  • 445epithelium
  • 390liver
  • 335kidney
  • 327heart
  • 286brain
  • 170vasculature
  • 164blood vessel
  • 159bone element
  • 122limb
  • 96musculature of body
  • 75artery
  • 61eye
  • 43nerve
  • 29embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8blood
  • 8bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2969AMP
  • 205T1D
  • 172HPAP
  • 47KPMP
  • 19LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • 2083GRCh38
  • 2083hg19
  • 5hg18
Lab
  • 2658AMP-T2D consortium
  • 287Kyle Gaulton, UCSD
  • 172Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 256inconsistent ontology term
  • 38audit script error
  • 27inconsistent control
Audit category:
  • 22missing controlled_by
Audit category:
  • 21inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

3415 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
RRBS
small RNA-seq
GRO-seq
FAIRE-seq
snDrop-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
tissue
adipose tissue2382313
liver145167201211311
kidney27497564136111
bone element84
heart left ventricle35321831141
primary cell
monocyte85541511
Langerhans cell8548
CD8-positive, alpha-beta T cell33421
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell21221
in vitro differentiated cells
adipocyte675811
cardiomyocytes359
embryonic stem cell40761
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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