Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 1329candidate regulatory elements
  • 927target gene predictions
  • 720chromatin state
  • 716accessible chromatin
  • 631gene expression
  • 389histone modifications
  • 169eQTL
  • 157binding sites
  • 143differential activity
  • 122variant allelic effects
  • 73Fine-mapped variants
  • 10caQTL
  • 7sQTL
  • 5hQTL
  • 5pQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 1894September, 2022
  • 1247February, 2021
  • 327November, 2021
  • 323May, 2021
  • 251September, 2023
  • 193February, 2024
  • 138May, 2020
  • 132June, 2020
  • 118August, 2021
  • 109March, 2020
  • 93January, 2022
  • 72January, 2020
  • 59February, 2020
  • 57March, 2023
  • 56January, 2021
  • 44November, 2022
  • 42May, 2022
  • 37May, 2024
  • 29August, 2017
  • 29March, 2025
  • 28March, 2024
  • 27February, 2023
  • 27October, 2022
  • 16April, 2020
  • 12October, 2019
  • 10November, 2019
  • 9August, 2018
  • 8April, 2019
  • 8May, 2019
  • 4February, 2025
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 3790bed bed3+
  • 847tsv
  • 658bed bed9
  • 512bigWig
  • 106txt
  • 32bigBed bed9
  • 27bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 5366Homo sapiens
Collection Tags
  • 1890EpiMap
  • 716ENCODE
  • 549DGA
  • 527ChIP-Atlas
  • 511AMP
  • 399T2DKP
  • 393T1D
  • 246KPMP
  • 212BLUEPRINT
  • 156 T2DKP
  • 134GTEx
  • 98T2D
  • 88eQTLCatalogue
  • 84CMDGA
  • 63HPAP
  • 33STARNET
  • 24FNIH_projects-heart
  • 12ROADMAP
  • 11FNIH_projects-liver
  • 64DN
Biosample type
  • 2595tissue
  • 2345primary cell
  • cell line
  • 468in vitro differentiated cells
  • 4stem cell
Organ
  • vasculature
  • 2842blood vessel
  • 2656vein
  • 2654bodily fluid
  • 2653blood
  • 915epithelium
  • 611kidney
  • 449connective tissue
  • 390brain
  • 363musculature of body
  • 255intestine
  • 248heart
  • 243pancreas
  • 237limb
  • 215lung
  • 143extraembryonic component
  • 140large intestine
  • 135liver
  • 134skin of body
  • 119stomach
  • 99eye
  • 96adipose tissue
  • 88embryo
  • 84small intestine
  • 75artery
  • 73adrenal gland
  • 70placenta
  • 64ureter
  • 51mammary gland
  • 49penis
  • 49thymus
  • 45esophagus
  • 43gonad
  • 40spinal cord
  • 36bone element
  • 34spleen
  • 25nerve
  • 25prostate gland
  • 23ovary
  • 23thyroid gland
  • 22lymphatic vessel
  • 19testis
  • 18lymphoid tissue
  • 18skeleton
  • 18uterus
  • 16bronchus
  • 15mouth
  • 13bone marrow
  • 13breast
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 3pituitary gland
  • 1pericardium
Project
  • 4756AMP
  • 327ENCODE
  • 246KPMP
  • 60T1D
  • 16LungMap
  • 5ITG
  • 4community
Genome assembly (visualization)
  • 4495hg19
  • 1455GRCh38
  • 3hg18
biosample_type!
  • cell line
organ_slims!
  • vasculature
BIOSAMPLE
TYPE

5414 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
gene expression
histone modifications
eQTL
binding sites
differential activity
variant allelic effects
Fine-mapped variants
caQTL
sQTL
hQTL
pQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
heart37202153112
stomach4021193111
kidney2914161072111
brain291618213211
lung33171611
primary cell
monocyte218158641121
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell7514330
B cell1710862
endothelial cell3715911222
in vitro differentiated cells
neural progenitor cell55410715
hematopoietic multipotent progenitor cell1910101111
adipocyte4664111
embryonic stem cell15611
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego