Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
272
gene expression
219
accessible chromatin
152
candidate regulatory elements
150
target gene predictions
96
differential activity
81
chromatin state
53
variant allelic effects
40
binding sites
24
histone modifications
22
eQTL
15
Fine-mapped variants
5
caQTL
Date released
221
February, 2021
211
September, 2022
165
September, 2023
127
November, 2021
81
February, 2024
36
March, 2023
30
August, 2021
28
January, 2020
26
May, 2020
24
June, 2020
24
March, 2020
24
May, 2021
20
January, 2021
18
February, 2020
16
November, 2022
15
February, 2023
10
May, 2024
8
October, 2022
7
April, 2020
7
October, 2019
6
August, 2018
6
January, 2022
5
August, 2017
3
March, 2024
3
November, 2019
2
May, 2022
2
September, 2018
1
January, 2018
1
July, 2020
1
May, 2019
Available data
646
bed bed3+
367
tsv
191
bigWig
80
txt
76
bed bed9
14
bigBed narrowPeak
9
bigBed bed9
6
csv
3
bam
3
bed gappedPeak
3
xls
Organism
1129
Homo sapiens
Biosample type
873
primary cell
229
tissue
cell line
27
in vitro differentiated cells
Organ
916
epithelium
611
kidney
437
connective tissue
389
brain
358
musculature of body
258
vasculature
255
intestine
248
heart
243
pancreas
237
limb
215
lung
198
blood vessel
143
extraembryonic component
140
large intestine
134
skin of body
130
liver
119
stomach
99
eye
88
embryo
86
adipose tissue
84
small intestine
73
adrenal gland
71
artery
70
placenta
64
ureter
51
mammary gland
49
penis
49
thymus
45
esophagus
43
gonad
40
spinal cord
36
bone element
34
spleen
25
nerve
25
prostate gland
23
ovary
23
thyroid gland
22
lymphatic vessel
21
vein
19
testis
18
lymphoid tissue
18
skeleton
18
uterus
16
bronchus
15
mouth
13
bodily fluid
13
bone marrow
13
breast
12
blood
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
3
pituitary gland
1
pericardium
Project
810
AMP
165
KPMP
127
ENCODE
20
T1D
7
LungMap
Genome assembly (visualization)
746
hg19
312
GRCh38
2
hg18
biosample_type!
cell line
BIOSAMPLE
TYPE
1129 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
candidate regulatory elements
target gene predictions
differential activity
chromatin state
variant allelic effects
binding sites
histone modifications
eQTL
Fine-mapped variants
caQTL
primary cell
endothelial cell
9
15
3
7
2
2
1
1
2
hepatocyte
13
8
2
3
1
2
1
4
epithelial cell of proximal tubule
16
1
2
1
1
1
1
glomerular endothelial cell
14
2
2
1
1
1
endothelial cell of umbilical vein
2
6
4
5
1
2
+ See 157 more…
tissue
adipose tissue
3
2
7
8
6
1
1
4
coronary artery
1
3
3
3
3
2
2
3
1
subcutaneous adipose tissue
5
2
2
1
1
1
6
3
pigmented layer of retina
20
tibial artery
1
3
3
2
3
2
2
3
+ See 32 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 5 more…
See all biosamples
Download