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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
44
ATAC-seq
38
DNase-seq
10
total RNA-seq
4
Hi-C
2
single cell RNA-seq
1
WGBS
Assay category
82
DNA accessibility
71
DNA binding
12
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
34
broad histone mark
19
control
17
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
69
October, 2019
35
February, 2023
34
June, 2019
12
May, 2019
8
July, 2019
6
February, 2021
4
February, 2020
2
August, 2021
Available data
133
bed narrowPeak
124
bam
99
bigWig
89
bigBed narrowPeak
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
12
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
170
Homo sapiens
Biosample type
168
tissue
cell line
2
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
170
AMP
Genome assembly (visualization)
139
GRCh38
104
hg19
Lab
170
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
organ_slims!
thymus
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
170 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
single cell RNA-seq
WGBS
tissue
coronary artery
5
36
2
1
tibial nerve
35
1
2
5
tibial artery
23
1
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 11 more…
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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