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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
262
ChIP-seq
42
ATAC-seq
40
DNase-seq
26
total RNA-seq
7
Hi-C
6
single cell RNA-seq
4
small RNA-seq
3
pCHi-C
2
FAIRE-seq
2
RRBS
2
WGBS
Assay category
262
DNA binding
84
DNA accessibility
36
Transcription
7
3D chromatin structure
4
DNA methylation
Target of assay
256
histone
256
histone modification
141
narrow histone mark
115
broad histone mark
control
6
RNA binding protein
6
transcription factor
Date released
119
October, 2019
76
November, 2017
64
May, 2019
36
February, 2023
34
June, 2019
25
July, 2019
15
February, 2020
13
October, 2017
6
August, 2021
6
March, 2020
2
November, 2018
Available data
317
bed narrowPeak
305
bam
305
bigWig
203
bigBed narrowPeak
99
tagAlign
57
bed broadPeak
48
bigBed broadPeak
44
bed bed3+
39
tsv
16
fastq
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
396
Homo sapiens
Biosample type
357
tissue
cell line
39
primary cell
Organ
812
pancreas
649
connective tissue
467
adipose tissue
420
epithelium
342
liver
326
kidney
309
heart
255
brain
159
bone element
150
vasculature
145
blood vessel
105
limb
90
musculature of body
68
artery
60
eye
32
nerve
22
embryo
20
lung
20
vein
18
ureter
spleen
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
396
AMP
Genome assembly (visualization)
334
GRCh38
248
hg19
Lab
396
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
biosample_type!
cell line
organ_slims!
spleen
target.investigated_as!
control
BIOSAMPLE
ASSAY
396 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
single cell RNA-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
WGBS
tissue
coronary artery
3
36
2
1
brain
17
1
14
1
1
tibial artery
18
1
2
1
aorta
11
1
1
4
1
2
layer of hippocampus
20
+ See 83 more…
primary cell
endothelial cell of umbilical vein
15
2
2
1
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
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