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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93ChIP-seq
  • 38ATAC-seq
  • 9DNase-seq
  • 9total RNA-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 93DNA binding
  • 48DNA accessibility
  • 15Transcription
  • 53D chromatin structure
  • 2DNA methylation
Target of assay
  • 70histone
  • 70histone modification
  • 45broad histone mark
  • 25narrow histone mark
  • 19control
  • 4RNA binding protein
  • 4transcription factor
Date released
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 11July, 2019
  • 6August, 2021
  • 5June, 2019
  • 4March, 2020
  • 3February, 2020
  • 3November, 2017
Available data
  • 117bed narrowPeak
  • 114bam
  • 94bigWig
  • 79bigBed narrowPeak
  • 16tsv
  • 13bed broadPeak
  • 13bigBed broadPeak
  • 11bed bed3+
  • 3fastq
  • 3hic
  • 2bedpe bed3+
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 164Homo sapiens
Biosample type
  • 133tissue
  • cell line
  • 31primary cell
Organ
  • 854pancreas
  • 684connective tissue
  • 491adipose tissue
  • 445epithelium
  • 390liver
  • 335kidney
  • 327heart
  • 286brain
  • 170vasculature
  • 164blood vessel
  • 159bone element
  • 122limb
  • 96musculature of body
  • 75artery
  • 61eye
  • 43nerve
  • 29embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8blood
  • 8bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 164AMP
Genome assembly (visualization)
  • 123GRCh38
  • 95hg19
Lab
  • 164AMP-T2D consortium
Audit category:
  • 1audit script error
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

164 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery53621
tibial artery23121
aorta1314121
ascending aorta1612
thoracic aorta1612
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
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