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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
DNase-seq
37
ChIP-seq
23
total RNA-seq
13
single cell RNA-seq
11
snATAC-seq
9
Hi-C
7
RRBS
6
small RNA-seq
5
ATAC-seq
4
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
82
DNA accessibility
42
Transcription
37
DNA binding
9
3D chromatin structure
8
DNA methylation
Target of assay
220
histone
histone modification
130
narrow histone mark
90
broad histone mark
37
control
3
RNA binding protein
3
transcription factor
Date released
65
June, 2019
28
July, 2019
19
April, 2020
18
November, 2017
14
February, 2020
9
October, 2019
8
March, 2020
7
August, 2017
4
May, 2019
4
October, 2017
2
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
120
bam
97
bigWig
69
bed bed3+
69
bed narrowPeak
69
bigBed narrowPeak
68
bed broadPeak
68
bigBed broadPeak
36
tsv
21
tagAlign
13
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
txt
Organism
181
Homo sapiens
Biosample type
158
tissue
24
primary cell
Organ
722
pancreas
606
connective tissue
459
adipose tissue
364
epithelium
305
kidney
305
liver
230
heart
159
bone element
99
brain
99
vasculature
94
blood vessel
73
limb
63
musculature of body
58
eye
55
artery
20
lung
19
nerve
19
spleen
18
ureter
17
embryo
16
skeleton
8
blood
8
bodily fluid
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
163
AMP
19
LungMap
Genome assembly (visualization)
93
hg19
89
GRCh38
Lab
163
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
biosample_type!
cell line
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
182 results
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DNase-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
pCHi-C
FAIRE-seq
WGBS
tissue
brain
14
3
1
1
1
lung
9
10
1
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
3
1
1
1
4
1
1
+ See 38 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
+ See 4 more…
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