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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
11
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
GRO-seq
Assay category
57
DNA binding
11
Transcription
3
DNA accessibility
Target of assay
36
histone
36
histone modification
20
broad histone mark
18
control
16
narrow histone mark
3
transcription factor
Date released
42
October, 2019
13
December, 2017
13
February, 2018
2
May, 2021
1
February, 2020
1
January, 2018
Available data
70
bam
52
bigWig
41
bed narrowPeak
27
fastq
26
bigBed narrowPeak
11
tsv
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
72
Homo sapiens
Biosample type
43
tissue
29
in vitro differentiated cells
cell line
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
52
GRCh38
52
hg19
1
hg18
Lab
72
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
biosample_type!
cell line
organ_slims!
lymph node
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
35
5
2
1
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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