Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 245gene expression
  • 201accessible chromatin
  • 120target gene predictions
  • 108candidate regulatory elements
  • 89differential activity
  • 52chromatin state
  • 39variant allelic effects
  • 35binding sites
  • 22histone modifications
  • 4eQTL
  • 3caQTL
Date released
  • 182February, 2021
  • 155September, 2023
  • 148September, 2022
  • 127November, 2021
  • 76February, 2024
  • 36March, 2023
  • 23August, 2021
  • 22June, 2020
  • 20January, 2021
  • 19May, 2021
  • 15November, 2022
  • 13January, 2020
  • 13May, 2020
  • 11February, 2023
  • 9February, 2020
  • 9May, 2024
  • 7April, 2020
  • 6August, 2018
  • 6October, 2022
  • 5March, 2020
  • 5October, 2019
  • 3August, 2017
  • 3July, 2025
  • 2March, 2024
  • 2May, 2022
  • 1July, 2020
Available data
  • 526bed bed3+
  • 317tsv
  • 174bigWig
  • 78txt
  • 49bed bed9
  • 14bigBed narrowPeak
  • 6csv
  • 3bam
  • 3bed gappedPeak
  • 3xls
  • 2bigBed bed9
  • 1bed bed3
  • 1bed narrowPeak
Organism
  • 918Homo sapiens
Collection Tags
  • 198DGA
  • 159AMP
  • 155KPMP
  • 147T2DKP
  • 141EpiMap
  • 64ChIP-Atlas
  • 63ENCODE
  • 44HPAP
  • 35 T2DKP
  • 27CMDGA
  • 20T1D
  • 6FNIH_projects-heart
  • 4T2D
  • 3FNIH_projects-liver
  • 2GTEx
Biosample type
  • 831primary cell
  • 61tissue
  • cell line
  • 26in vitro differentiated cells
Organ
  • 2902vasculature
  • 2842blood vessel
  • 2656vein
  • 2654bodily fluid
  • 2653blood
  • 918epithelium
  • 611kidney
  • 451connective tissue
  • 390brain
  • 375musculature of body
  • 255intestine
  • 248heart
  • 243pancreas
  • 237limb
  • 215lung
  • 143extraembryonic component
  • 140large intestine
  • 135liver
  • 134skin of body
  • 119stomach
  • 99eye
  • 96adipose tissue
  • 88embryo
  • 84small intestine
  • 75artery
  • 73adrenal gland
  • 70placenta
  • 64ureter
  • 51mammary gland
  • 49penis
  • 49thymus
  • 45esophagus
  • 43gonad
  • 40spinal cord
  • 36bone element
  • 34spleen
  • 25nerve
  • 25prostate gland
  • 23ovary
  • 23thyroid gland
  • 22lymphatic vessel
  • 19testis
  • 18lymphoid tissue
  • 18skeleton
  • 18uterus
  • 16bronchus
  • 15mouth
  • 13bone marrow
  • 13breast
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 3pituitary gland
  • 1pericardium
Project
  • 609AMP
  • 155KPMP
  • 127ENCODE
  • 20T1D
  • 7LungMap
Genome assembly (visualization)
  • 577hg19
  • 241GRCh38
Encyclopedia version
  • 1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
biosample_type!
  • cell line
BIOSAMPLE
TYPE

918 results

search-icontable-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
chromatin state
variant allelic effects
binding sites
histone modifications
eQTL
caQTL
primary cell
endothelial cell9167322123
hepatocyte138321214
epithelial cell of proximal tubule16112111
glomerular endothelial cell1421211
endothelial cell of umbilical vein246512
tissue
pigmented layer of retina20
breast epithelium1352
esophagus squamous epithelium1262
kidney epithelium11
pancreatic ductal cell2
in vitro differentiated cells
retinal pigment epithelial cell6
hepatocyte121
foreskin keratinocyte111
hepatocyte(AFP)3
mammary gland epithelial cell111
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego