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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 114ChIP-seq
  • 97total RNA-seq
  • 84ATAC-seq
  • 70single cell RNA-seq
  • 47WGBS
  • 18DNase-seq
  • 7Hi-C
  • 6RRBS
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 167Transcription
  • 114DNA binding
  • 103DNA accessibility
  • 53DNA methylation
  • 73D chromatin structure
Target of assay
  • 81histone
  • 81histone modification
  • 43narrow histone mark
  • 38broad histone mark
  • 25control
  • 8transcription factor
  • 7RNA binding protein
  • 1chromatin remodeller
Date released
  • 80May, 2022
  • 61September, 2018
  • 51February, 2023
  • 33April, 2018
  • 33July, 2018
  • 33October, 2019
  • 29August, 2017
  • 20June, 2019
  • 19December, 2017
  • 19September, 2020
  • 13July, 2019
  • 7August, 2020
  • 6December, 2019
  • 6February, 2021
  • 6November, 2017
  • 5May, 2019
  • 5May, 2021
  • 5September, 2017
  • 4August, 2021
  • 3August, 2018
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
  • 1March, 2020
Available data
  • 266bam
  • 257fastq
  • 251bigWig
  • 136bed narrowPeak
  • 121tsv
  • 80zippedFastqFolder
  • 75bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 5hic
  • 4bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 445Homo sapiens
Biosample type
  • 406primary cell
  • cell line
  • 24in vitro differentiated cells
  • 15tissue
Organ
  • 854pancreas
  • 684connective tissue
  • 491adipose tissue
  • 445epithelium
  • 390liver
  • 335kidney
  • 327heart
  • 286brain
  • 170vasculature
  • 164blood vessel
  • 159bone element
  • 122limb
  • 96musculature of body
  • 75artery
  • 61eye
  • 43nerve
  • 29embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8blood
  • 8bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 293AMP
  • 152HPAP
Genome assembly (visualization)
  • 259hg19
  • 245GRCh38
Lab
  • 293AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
Audit category:
  • 15inconsistent ontology term
  • 5audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

445 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell13523512311
pancreatic beta cell13212312161
pancreatic acinar cell849121
pancreatic ductal cell134410
endothelial cell of umbilical vein17221
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina212
renal glomerulus1
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