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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
76
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
43
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
163
DNA accessibility
121
Transcription
43
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
31
histone
31
histone modification
16
narrow histone mark
15
broad histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
81
June, 2019
47
September, 2023
23
April, 2019
17
October, 2019
14
May, 2023
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
Available data
176
bed narrowPeak
130
bam
120
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
1
tagAlign
Organism
337
Homo sapiens
Biosample type
301
tissue
36
primary cell
cell line
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
mammary gland
Project
290
AMP
47
KPMP
Genome assembly (visualization)
194
GRCh38
118
hg19
Lab
148
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
8
inconsistent ontology term
7
audit script error
biosample_type!
cell line
organ_slims!
lymph node
BIOSAMPLE
ASSAY
337 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 12 more…
primary cell
epithelial cell of proximal tubule
1
1
10
1
kidney epithelial cell
1
1
5
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
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