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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
12
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
pCHi-C
1
small RNA-seq
Assay category
162
DNA accessibility
121
Transcription
12
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
80
June, 2019
47
September, 2023
14
May, 2023
11
July, 2019
8
February, 2021
7
October, 2019
5
April, 2019
3
December, 2019
2
May, 2019
1
March, 2020
Available data
145
bed narrowPeak
99
bam
89
bigWig
81
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
19
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
306
Homo sapiens
Biosample type
280
tissue
26
primary cell
cell line
Organ
722
pancreas
606
connective tissue
459
adipose tissue
364
epithelium
305
kidney
305
liver
230
heart
159
bone element
99
brain
99
vasculature
94
blood vessel
73
limb
63
musculature of body
58
eye
55
artery
20
lung
19
nerve
19
spleen
18
ureter
17
embryo
16
skeleton
8
blood
8
bodily fluid
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
mammary gland
Project
259
AMP
47
KPMP
Genome assembly (visualization)
163
GRCh38
87
hg19
Lab
142
Katalin Susztak, Upenn
117
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
7
inconsistent ontology term
biosample_type!
cell line
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
306 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
pCHi-C
small RNA-seq
tissue
kidney
13
75
64
49
7
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 11 more…
primary cell
epithelial cell of proximal tubule
1
1
3
1
kidney epithelial cell
1
1
2
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
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