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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
27
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
pCHi-C
1
small RNA-seq
Assay category
162
DNA accessibility
121
Transcription
27
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
80
June, 2019
47
September, 2023
15
April, 2019
14
May, 2023
11
July, 2019
10
October, 2019
8
February, 2021
4
May, 2019
3
December, 2019
1
March, 2020
Available data
160
bed narrowPeak
114
bam
104
bigWig
93
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
19
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
321
Homo sapiens
Biosample type
290
tissue
31
primary cell
cell line
Organ
790
pancreas
651
connective tissue
479
adipose tissue
402
epithelium
339
liver
320
kidney
287
heart
169
brain
159
bone element
144
vasculature
139
blood vessel
107
limb
83
musculature of body
69
artery
58
eye
35
nerve
23
spleen
21
embryo
20
lung
18
ureter
16
skeleton
16
vein
8
blood
8
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
mammary gland
Project
274
AMP
47
KPMP
Genome assembly (visualization)
178
GRCh38
102
hg19
Lab
142
Katalin Susztak, Upenn
132
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
7
inconsistent ontology term
biosample_type!
cell line
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
321 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
pCHi-C
small RNA-seq
tissue
kidney
13
75
64
49
17
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
epithelial cell of proximal tubule
1
1
6
1
kidney epithelial cell
1
1
4
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
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