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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 80DNase-seq
  • 75ATAC-seq
  • 64single cell RNA-seq
  • 56total RNA-seq
  • 42ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2RNA microarray
  • 1FAIRE-seq
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • 162DNA accessibility
  • 121Transcription
  • 42DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 9control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 128August, 2021
  • 81June, 2019
  • 47September, 2023
  • 23April, 2019
  • 15October, 2019
  • 14May, 2023
  • 11July, 2019
  • 8February, 2021
  • 5May, 2019
  • 3December, 2019
Available data
  • 175bed narrowPeak
  • 129bam
  • 119bigWig
  • 103bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 18tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 335Homo sapiens
Biosample type
  • 299tissue
  • 36primary cell
  • cell line
Organ
  • 854pancreas
  • 684connective tissue
  • 491adipose tissue
  • 445epithelium
  • 390liver
  • 335kidney
  • 327heart
  • 286brain
  • 170vasculature
  • 164blood vessel
  • 159bone element
  • 122limb
  • 96musculature of body
  • 75artery
  • 61eye
  • 43nerve
  • 29embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8blood
  • 8bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 288AMP
  • 47KPMP
Genome assembly (visualization)
  • 193GRCh38
  • 117hg19
Lab
  • 146AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 47KPMP
Audit category:
  • 8inconsistent ontology term
  • 7audit script error
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

335 results

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Clear Filters
DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney13756449276111
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule11101
kidney epithelial cell1151
kidney tubule cell31
kidney glomerular epithelial cell21
renal cortical epithelial cell111
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