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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
175
total RNA-seq
23
ATAC-seq
7
DNase-seq
6
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
single cell RNA-seq
Assay category
194
DNA binding
179
Transcription
30
DNA accessibility
8
DNA methylation
2
3D chromatin structure
Target of assay
91
histone modification
90
histone
56
control
53
narrow histone mark
47
transcription factor
37
broad histone mark
4
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
193
May, 2020
63
December, 2017
54
August, 2017
40
May, 2022
16
November, 2018
10
July, 2019
7
December, 2018
7
January, 2019
7
October, 2019
5
December, 2019
4
August, 2021
4
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
1
October, 2017
Available data
339
bam
306
bigWig
160
tsv
147
bed narrowPeak
122
fastq
78
bigBed narrowPeak
74
tagAlign
13
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
415
Homo sapiens
Biosample type
cell line
386
tissue
15
in vitro differentiated cells
14
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
415
AMP
Genome assembly (visualization)
309
hg19
279
GRCh38
Lab
375
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
cell line
organ_slims!
thymus
BIOSAMPLE
ASSAY
415 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
145
167
20
2
3
1
1
1
1
1
spleen
20
1
1
2
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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