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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 175total RNA-seq
  • 174ChIP-seq
  • 22ATAC-seq
  • 6DNase-seq
  • 4WGBS
  • 3small RNA-seq
  • 2Hi-C
  • 2RRBS
  • 1pCHi-C
  • 1single cell RNA-seq
Assay category
  • 179Transcription
  • 174DNA binding
  • 28DNA accessibility
  • 6DNA methylation
  • 23D chromatin structure
Target of assay
  • 85histone modification
  • 84histone
  • 51narrow histone mark
  • 48control
  • 41transcription factor
  • 33broad histone mark
  • 4RNA binding protein
  • 3chromatin remodeller
Date released
  • 193May, 2020
  • 63December, 2017
  • 54August, 2017
  • 40May, 2022
  • 10July, 2019
  • 7November, 2018
  • 7October, 2019
  • 5December, 2019
  • 4August, 2021
  • 3March, 2020
  • 2June, 2019
  • 1February, 2020
  • 1February, 2021
Available data
  • 315bam
  • 290bigWig
  • 159tsv
  • 133bed narrowPeak
  • 98fastq
  • 74tagAlign
  • 65bigBed narrowPeak
  • 12bed bed3+
  • 5bed broadPeak
  • 5bigBed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bedpe bed3+
  • 1csv
  • 1hdf5
  • 1hic
Organism
  • 390Homo sapiens
Biosample type
  • cell line
  • 361tissue
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 854pancreas
  • 684connective tissue
  • 491adipose tissue
  • 445epithelium
  • 390liver
  • 335kidney
  • 327heart
  • 286brain
  • 170vasculature
  • 164blood vessel
  • 159bone element
  • 122limb
  • 96musculature of body
  • 75artery
  • 61eye
  • 43nerve
  • 29embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8blood
  • 8bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 390AMP
Genome assembly (visualization)
  • 295hg19
  • 263GRCh38
Lab
  • 350AMP-T2D consortium
  • 40Karen Mohlke, UNC
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
Audit category:
  • 1inconsistent control read length
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

390 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver167145202311111
right lobe of liver3101212
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte5411
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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