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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 364total RNA-seq
  • 190ChIP-seq
  • 133ATAC-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 11snATAC-seq
  • 7DNase-seq
  • 7Hi-C
  • 4MeRIP-seq
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1pCHi-C
Assay category
  • 446Transcription
  • 190DNA binding
  • 153DNA accessibility
  • 53DNA methylation
  • 73D chromatin structure
Target of assay
  • 132histone
  • 132histone modification
  • 68broad histone mark
  • 64narrow histone mark
  • 42control
  • 18transcription factor
  • 8RNA binding protein
  • 2nucleotide modification
Date released
  • 188August, 2017
  • 157July, 2018
  • 104May, 2022
  • 72September, 2018
  • 55February, 2023
  • 53October, 2018
  • 40May, 2021
  • 39April, 2018
  • 39November, 2019
  • 19September, 2020
  • 11September, 2017
  • 9March, 2020
  • 8January, 2021
  • 7August, 2020
  • 7November, 2018
  • 6February, 2021
  • 6July, 2019
  • 5March, 2019
  • 5October, 2017
  • 4June, 2019
  • 4November, 2020
  • 3August, 2018
  • 3October, 2019
  • 3October, 2022
  • 2August, 2021
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 626bam
  • 567bigWig
  • 471fastq
  • 383tsv
  • 193bed narrowPeak
  • 84bigBed narrowPeak
  • 80zippedFastqFolder
  • 27bed bed3+
  • 20bed broadPeak
  • 19tagAlign
  • 6bed bedMethyl
  • 6bedpe bed3+
  • 6bigBed bedMethyl
  • 6bigBed broadPeak
  • 6hic
  • 6txt
  • 3cool
  • 1bedpe
Organism
  • 847Homo sapiens
Biosample type
  • 505tissue
  • 346primary cell
  • cell line
  • 3in vitro differentiated cells
Organ
  • 854pancreas
  • 684connective tissue
  • 491adipose tissue
  • 445epithelium
  • 390liver
  • 335kidney
  • 327heart
  • 286brain
  • 170vasculature
  • 164blood vessel
  • 159bone element
  • 122limb
  • 96musculature of body
  • 75artery
  • 61eye
  • 43nerve
  • 29embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8blood
  • 8bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 672AMP
  • 152HPAP
  • 30T1D
Genome assembly (visualization)
  • 600hg19
  • 580GRCh38
Lab
  • 639AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 5inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

854 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans27850586713411
body of pancreas3354242
pancreas2162421111
endocrine pancreas16
primary cell
pancreatic alpha cell52133512311
pancreatic beta cell21132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
pancreatic endocrine cell23
in vitro differentiated cells
pancreatic PP cell3
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