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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
RRBS
1
pCHi-C
1
total RNA-seq
Assay category
14
DNA binding
3
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
8
control
6
histone
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
7
December, 2018
2
July, 2019
1
January, 2019
1
March, 2020
1
October, 2017
Available data
19
bam
18
fastq
11
bigWig
8
bed narrowPeak
7
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
21
Homo sapiens
Biosample type
20
tissue
1
primary cell
Organ
722
pancreas
606
connective tissue
459
adipose tissue
364
epithelium
305
kidney
305
liver
230
heart
159
bone element
99
brain
99
vasculature
94
blood vessel
73
limb
63
musculature of body
58
eye
55
artery
20
lung
19
nerve
19
spleen
18
ureter
17
embryo
16
skeleton
8
blood
8
bodily fluid
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
11
GRCh38
10
hg19
Lab
21
AMP-T2D consortium
biosample_type!
cell line
organ_slims!
ovary
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
RRBS
pCHi-C
total RNA-seq
tissue
spleen
14
2
1
1
1
pericardium
1
primary cell
pericardium fibroblast
1
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