Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 8candidate regulatory elements
  • 5target gene predictions
  • 4chromatin state
  • 2binding sites
  • 2histone modifications
  • 1accessible chromatin
  • 1eQTL
  • 1gene expression
  • 1variant allelic effects
Date released
  • 12September, 2022
  • 8February, 2021
  • 1February, 2024
  • 1January, 2022
  • 1June, 2020
  • 1March, 2024
  • 1May, 2021
Available data
  • 20bed bed3+
  • 4bed bed9
  • 1tsv
Organism
  • 25Homo sapiens
Collection Tags
  • 12EpiMap
  • 5ChIP-Atlas
  • 4ENCODE
  • 2DGA
  • 1GTEx
  • 1T1D
  • 1T2D
  • 1eQTLCatalogue
Biosample type
  • cell line
  • 15tissue
  • 10primary cell
Organ
  • 2902vasculature
  • 2842blood vessel
  • 2656vein
  • 2654bodily fluid
  • 2653blood
  • 915epithelium
  • 611kidney
  • 449connective tissue
  • 390brain
  • 363musculature of body
  • 255intestine
  • 248heart
  • 243pancreas
  • 237limb
  • 215lung
  • 143extraembryonic component
  • 140large intestine
  • 135liver
  • 134skin of body
  • 119stomach
  • 99eye
  • 96adipose tissue
  • 88embryo
  • 84small intestine
  • 75artery
  • 73adrenal gland
  • 70placenta
  • 64ureter
  • 51mammary gland
  • 49penis
  • 49thymus
  • 45esophagus
  • 43gonad
  • 40spinal cord
  • 36bone element
  • 34spleen
  • 25nerve
  • 25prostate gland
  • 23ovary
  • 23thyroid gland
  • 22lymphatic vessel
  • 19testis
  • 18lymphoid tissue
  • 18skeleton
  • 18uterus
  • 16bronchus
  • 15mouth
  • 13bone marrow
  • 13breast
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 3pituitary gland
  • 1pericardium
Project
  • 25AMP
Genome assembly (visualization)
  • 23hg19
  • 5GRCh38
biosample_type!
  • cell line
BIOSAMPLE
TYPE

25 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
binding sites
histone modifications
accessible chromatin
eQTL
gene expression
variant allelic effects
tissue
prostate gland4222211
prostate1
primary cell
epithelial cell of prostate432
luminal epithelial cell of prostatic duct1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego