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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 96ChIP-seq
  • 38ATAC-seq
  • 11DNase-seq
  • 9total RNA-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 96DNA binding
  • 50DNA accessibility
  • 15Transcription
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 20control
  • 5RNA binding protein
  • 5transcription factor
Date released
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 12July, 2019
  • 7June, 2019
  • 6August, 2021
  • 6November, 2017
  • 4March, 2020
  • 3February, 2020
Available data
  • 121bed narrowPeak
  • 119bam
  • 99bigWig
  • 83bigBed narrowPeak
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 16tsv
  • 13bed bed3+
  • 6fastq
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 170Homo sapiens
Biosample type
  • 133tissue
  • cell line
  • 37primary cell
Organ
  • 854pancreas
  • 684connective tissue
  • 491adipose tissue
  • 445epithelium
  • 390liver
  • 335kidney
  • 327heart
  • 286brain
  • 170vasculature
  • 164blood vessel
  • 159bone element
  • 122limb
  • 96musculature of body
  • 75artery
  • 61eye
  • 43nerve
  • 29embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8blood
  • 8bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 170AMP
Genome assembly (visualization)
  • 127GRCh38
  • 101hg19
Lab
  • 170AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

170 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery53621
tibial artery23121
aorta1314121
ascending aorta1612
thoracic aorta1612
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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