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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1387ChIP-seq
  • 502ATAC-seq
  • 210DNase-seq
  • 84snATAC-seq
  • 74WGBS
  • 63total RNA-seq
  • 51pCHi-C
  • 30Hi-C
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 3single cell RNA-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1RNA microarray
Assay category
  • 1387DNA binding
  • 801DNA accessibility
  • 96DNA methylation
  • 68Transcription
  • 303D chromatin structure
Target of assay
  • 979histone modification
  • 978histone
  • 495narrow histone mark
  • 482broad histone mark
  • 258control
  • 153transcription factor
  • 49RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 322August, 2017
  • 262October, 2019
  • 218June, 2019
  • 200May, 2021
  • 195May, 2020
  • 140May, 2022
  • 120May, 2019
  • 112August, 2021
  • 105February, 2023
  • 94December, 2017
  • 91November, 2017
  • 80April, 2019
  • 74October, 2018
  • 59July, 2019
  • 48February, 2021
  • 46September, 2018
  • 42March, 2020
  • 40May, 2024
  • 26November, 2018
  • 26November, 2019
  • 24February, 2018
  • 23October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 10April, 2020
  • 7August, 2020
  • 7December, 2018
  • 7January, 2018
  • 7January, 2019
  • 5March, 2019
  • 3March, 2023
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
Available data
  • 1574bam
  • 1415bigWig
  • 1413bed narrowPeak
  • 687bigBed narrowPeak
  • 565fastq
  • 378tagAlign
  • 268bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 111tsv
  • 101zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 7bed bedgraph
  • 4hdf5
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 2430Homo sapiens
Biosample type
  • 1461tissue
  • 714primary cell
  • cell line
  • 256in vitro differentiated cells
  • 10stem cell
Organ
  • 404pancreas
  • 282epithelium
  • 265brain
  • 217heart
  • 213kidney
  • 211liver
  • 209connective tissue
  • 157vasculature
  • 151blood vessel
  • 119limb
  • 91adipose tissue
  • 88musculature of body
  • 71artery
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 11lung
  • 8blood
  • 8bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2104AMP
  • 177T1D
  • 147HPAP
  • 10LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • 1450hg19
  • 1432GRCh38
  • 5hg18
Lab
  • 1857AMP-T2D consortium
  • 268Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Bing Ren, UCSD
  • 2Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 78inconsistent ontology term
  • 33audit script error
  • 27inconsistent control
Audit category:
  • 76missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

2441 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
single cell RNA-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
RNA microarray
tissue
liver1452023111
islet of Langerhans7168174311
kidney2775136111
heart left ventricle35234111
body of pancreas35442
primary cell
monocyte8515211
pancreatic alpha cell1335311
pancreatic beta cell1323161
Langerhans cell48
CD8-positive, alpha-beta T cell33221
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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