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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1224total RNA-seq
  • 1206ChIP-seq
  • 397ATAC-seq
  • 280single cell RNA-seq
  • 183DNase-seq
  • 87RNA microarray
  • 79snATAC-seq
  • 74WGBS
  • 23pCHi-C
  • 21Hi-C
  • 21RRBS
  • 7small RNA-seq
  • 5GRO-seq
  • 2FAIRE-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1snDrop-seq
Assay category
  • 1513Transcription
  • 1206DNA binding
  • 661DNA accessibility
  • 95DNA methylation
  • 213D chromatin structure
Target of assay
  • 846histone modification
  • 845histone
  • 439broad histone mark
  • 405narrow histone mark
  • 243control
  • 120transcription factor
  • 40RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 608February, 2021
  • 378August, 2017
  • 252May, 2020
  • 244May, 2021
  • 234October, 2019
  • 227August, 2021
  • 198May, 2022
  • 188June, 2019
  • 152February, 2023
  • 124July, 2018
  • 120May, 2019
  • 91December, 2017
  • 91November, 2017
  • 79April, 2019
  • 75October, 2018
  • 72July, 2019
  • 72September, 2018
  • 59September, 2020
  • 47September, 2023
  • 44November, 2019
  • 40May, 2024
  • 38February, 2018
  • 25November, 2018
  • 21March, 2020
  • 19April, 2020
  • 16October, 2017
  • 15May, 2023
  • 14January, 2021
  • 10April, 2018
  • 10December, 2019
  • 9September, 2017
  • 7August, 2020
  • 7December, 2018
  • 7January, 2018
  • 7January, 2019
  • 6November, 2020
  • 2June, 2018
  • 2March, 2023
  • 1August, 2018
  • 1August, 2022
Available data
  • 2327bam
  • 2180bigWig
  • 1240bed narrowPeak
  • 1179tsv
  • 802fastq
  • 647bigBed narrowPeak
  • 262tagAlign
  • 237bed broadPeak
  • 202bed bed3+
  • 202bigBed broadPeak
  • 155txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 14bedpe bed3+
  • 13hic
  • 7bed bedgraph
  • 6csv
  • 5bed bed3
  • 4hdf5
  • 2ibed
  • 1tar
Organism
  • 3601Homo sapiens
Biosample type
  • 2535tissue
  • 786primary cell
  • cell line
  • 282in vitro differentiated cells
  • 9stem cell
Organ
  • 716pancreas
  • 627connective tissue
  • 474adipose tissue
  • 374liver
  • 364epithelium
  • 316kidney
  • 302heart
  • 215brain
  • 163vasculature
  • 157blood vessel
  • 151bone element
  • 119limb
  • 87musculature of body
  • 71artery
  • 58eye
  • 42nerve
  • 27embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 6blood
  • 6bodily fluid
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 3126AMP
  • 321HPAP
  • 97T1D
  • 47KPMP
  • 19LungMap
  • 2community
Genome assembly (visualization)
  • 2236GRCh38
  • 2189hg19
  • 5hg18
Lab
  • 2814AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 184Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 3Struan F.A. Grant, CHOP
  • 2Anna Gloyn, Oxford
Audit category:
  • 210inconsistent ontology term
  • 38audit script error
  • 27inconsistent control
Audit category:
  • 62missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

3612 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
GRO-seq
FAIRE-seq
CRISPR RNA-seq
CRISPRi RNA-seq
snDrop-seq
tissue
islet of Langerhans282495054111
adipose tissue382213
liver1651392013111
kidney4926756411611
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell521335131
monocyte2838131
pancreatic beta cell211323116
exocrine cell39
in vitro differentiated cells
adipocyte46041
cardiomyocytes473
embryonic stem cell2292
pancreatic endoderm4181
cardiac precursors (cardiac muscle cell)1911
stem cell
hESC31
SB Ad3.111
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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