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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 339ChIP-seq
  • 221total RNA-seq
  • 192ATAC-seq
  • 95single cell RNA-seq
  • 47DNase-seq
  • 43pCHi-C
  • 19RRBS
  • 17Hi-C
  • 12snATAC-seq
  • 11small RNA-seq
  • 7WGBS
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 339DNA binding
  • 327Transcription
  • 255DNA accessibility
  • 27DNA methylation
  • 173D chromatin structure
Target of assay
  • 236histone
  • 236histone modification
  • 140narrow histone mark
  • 96broad histone mark
  • 75transcription factor
  • 33control
  • 20RNA binding protein
  • 4chromatin remodeller
  • 2nucleotide modification
Date released
  • 147May, 2021
  • 143May, 2020
  • 96October, 2019
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 56August, 2017
  • 52August, 2021
  • 50February, 2023
  • 45July, 2018
  • 39April, 2018
  • 39February, 2021
  • 38March, 2020
  • 25February, 2020
  • 24November, 2019
  • 14May, 2019
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 6November, 2017
  • 6November, 2018
  • 5January, 2021
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 722bam
  • 673bigWig
  • 361bed narrowPeak
  • 345tsv
  • 234fastq
  • 176bigBed narrowPeak
  • 128tagAlign
  • 104bed bed3+
  • 66bed broadPeak
  • 64bigBed broadPeak
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bedgraph
  • 6bed bed3
  • 4hdf5
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 1016Homo sapiens
Biosample type
  • 476primary cell
  • cell line
  • 353tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 176pancreas
  • 155epithelium
  • 96brain
  • 79liver
  • 68connective tissue
  • 47vasculature
  • 42blood vessel
  • 39heart
  • 39kidney
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 9artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 5embryo
  • 2blood
  • 2bodily fluid
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 852AMP
  • 154T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 756hg19
  • 649GRCh38
Lab
  • 813AMP-T2D consortium
  • 170Kyle Gaulton, UCSD
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 107inconsistent ontology term
  • 27inconsistent control
  • 6audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1016 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
snATAC-seq
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
tissue
islet of Langerhans221037611234
liver4231111
brain111121
heart531411
kidney12141
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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