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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 158ChIP-seq
  • 87ATAC-seq
  • 31total RNA-seq
  • 20DNase-seq
  • 19RRBS
  • 15pCHi-C
  • 8Hi-C
  • 7WGBS
  • 7snATAC-seq
  • 6single cell RNA-seq
  • 1FAIRE-seq
Assay category
  • 158DNA binding
  • 115DNA accessibility
  • 37Transcription
  • 26DNA methylation
  • 83D chromatin structure
Target of assay
  • 103histone
  • 103histone modification
  • 53broad histone mark
  • 50narrow histone mark
  • 42transcription factor
  • 16control
  • 11RNA binding protein
  • 4chromatin remodeller
Date released
  • 59December, 2017
  • 55May, 2020
  • 46October, 2019
  • 32June, 2019
  • 28February, 2021
  • 24July, 2019
  • 23August, 2017
  • 23November, 2019
  • 14May, 2019
  • 13May, 2021
  • 7December, 2019
  • 7October, 2018
  • 6March, 2020
  • 6November, 2017
  • 4August, 2021
  • 4November, 2018
  • 3February, 2023
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 239bam
  • 206bigWig
  • 188bed narrowPeak
  • 136bigBed narrowPeak
  • 105fastq
  • 43tsv
  • 40bed broadPeak
  • 40bigBed broadPeak
  • 36bed bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12tagAlign
  • 7bed bedgraph
  • 6bedpe bed3+
  • 4hdf5
  • 4hic
  • 3txt
  • 2ibed
  • 1tar
Organism
  • 359Homo sapiens
Biosample type
  • cell line
  • 174primary cell
  • 111tissue
  • 71in vitro differentiated cells
  • 3stem cell
Organ
  • 74epithelium
  • 63liver
  • 40vasculature
  • 38pancreas
  • 35blood vessel
  • 25brain
  • 20kidney
  • 18vein
  • 14heart
  • 13musculature of body
  • 11connective tissue
  • 5artery
  • 5limb
  • 4eye
  • 3embryo
  • 1bone element
  • 1bone marrow
  • 1pericardium
  • 1thymus
Project
  • 337AMP
  • 16T1D
  • 6HPAP
Genome assembly (visualization)
  • 262hg19
  • 222GRCh38
Lab
  • 330AMP-T2D consortium
  • 16Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 56inconsistent ontology term
  • 27inconsistent control
  • 2audit script error
Audit category:
  • 8inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

359 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
RRBS
pCHi-C
Hi-C
WGBS
snATAC-seq
single cell RNA-seq
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15121
endothelial cell of umbilical vein1611
macrophage11
tissue
liver3611
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC3
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