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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1193total RNA-seq
  • 1048ChIP-seq
  • 310ATAC-seq
  • 274single cell RNA-seq
  • 163DNase-seq
  • 87RNA microarray
  • 72snATAC-seq
  • 67WGBS
  • 13Hi-C
  • 8pCHi-C
  • 7small RNA-seq
  • 5GRO-seq
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1FAIRE-seq
  • 1snDrop-seq
Assay category
  • 1476Transcription
  • 1048DNA binding
  • 546DNA accessibility
  • 69DNA methylation
  • 133D chromatin structure
Target of assay
  • 743histone modification
  • 742histone
  • 386broad histone mark
  • 355narrow histone mark
  • 227control
  • 78transcription factor
  • 29RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
Date released
  • 580February, 2021
  • 355August, 2017
  • 231May, 2021
  • 223August, 2021
  • 198May, 2022
  • 197May, 2020
  • 188October, 2019
  • 156June, 2019
  • 149February, 2023
  • 123July, 2018
  • 106May, 2019
  • 85November, 2017
  • 78April, 2019
  • 72September, 2018
  • 68October, 2018
  • 59September, 2020
  • 48July, 2019
  • 47September, 2023
  • 40May, 2024
  • 38February, 2018
  • 32December, 2017
  • 21November, 2018
  • 21November, 2019
  • 19April, 2020
  • 16October, 2017
  • 15March, 2020
  • 15May, 2023
  • 11January, 2021
  • 10April, 2018
  • 9September, 2017
  • 7August, 2020
  • 7December, 2018
  • 7January, 2018
  • 7January, 2019
  • 6November, 2020
  • 3December, 2019
  • 2June, 2018
  • 2March, 2023
  • 1August, 2018
  • 1August, 2022
Available data
  • 2088bam
  • 1974bigWig
  • 1136tsv
  • 1052bed narrowPeak
  • 697fastq
  • 511bigBed narrowPeak
  • 250tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153zippedFastqFolder
  • 152txt
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 9hic
  • 8bedpe bed3+
  • 6csv
  • 5bed bed3
Organism
  • 3242Homo sapiens
Biosample type
  • 2424tissue
  • 612primary cell
  • 211in vitro differentiated cells
  • cell line
  • 6stem cell
Organ
  • 678pancreas
  • 616connective tissue
  • 474adipose tissue
  • 311liver
  • 296kidney
  • 290epithelium
  • 288heart
  • 190brain
  • 150bone element
  • 123vasculature
  • 122blood vessel
  • 114limb
  • 74musculature of body
  • 66artery
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 8skeleton
  • 6blood
  • 6bodily fluid
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 2789AMP
  • 315HPAP
  • 81T1D
  • 47KPMP
  • 19LungMap
  • 2community
Genome assembly (visualization)
  • 2014GRCh38
  • 1927hg19
  • 5hg18
Lab
  • 2484AMP-T2D consortium
  • 315Klaus Kaestner, Upenn
  • 168Kyle Gaulton, UCSD
  • 138Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 2Anna Gloyn, Oxford
Audit category:
  • 154inconsistent ontology term
  • 36audit script error
Audit category:
  • 62missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

3253 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
GRO-seq
RRBS
CRISPR RNA-seq
CRISPRi RNA-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue382213
islet of Langerhans28249314141
liver164103201311
kidney492675641121
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell521335125
monocyte283813
pancreatic beta cell211223116
exocrine cell39
in vitro differentiated cells
adipocyte460
cardiomyocytes473
embryonic stem cell2291
pancreatic endoderm4151
definitive endodermal cell251
stem cell
SB Ad3.111
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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