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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 255ChIP-seq
  • 3single cell RNA-seq
  • 2MeRIP-seq
Assay category
  • 255DNA binding
  • 3Transcription
Target of assay
  • 979histone modification
  • 978histone
  • 495narrow histone mark
  • 482broad histone mark
  • 260control
  • 153transcription factor
  • 49RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
Date released
  • 50August, 2017
  • 30October, 2019
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 21December, 2017
  • 15November, 2017
  • 14April, 2019
  • 9May, 2021
  • 8August, 2021
  • 8February, 2018
  • 8June, 2019
  • 6September, 2017
  • 4December, 2018
  • 3July, 2019
  • 3November, 2018
  • 3October, 2017
  • 2November, 2020
  • 1January, 2019
Available data
  • 230bam
  • 106fastq
  • 64tagAlign
  • 10bigWig
  • 9bed bed3+
  • 3tsv
Organism
  • 259Homo sapiens
Biosample type
  • 187tissue
  • cell line
  • 37in vitro differentiated cells
  • 35primary cell
  • 1stem cell
Organ
  • 48liver
  • 42pancreas
  • 35connective tissue
  • 31brain
  • 25epithelium
  • 24adipose tissue
  • 20vasculature
  • 19blood vessel
  • 18heart
  • 17limb
  • 11nerve
  • 9kidney
  • 8spleen
  • 7artery
  • 7embryo
  • 6musculature of body
  • 2vein
  • 1eye
Project
  • 260AMP
Genome assembly (visualization)
  • 19hg19
  • 12GRCh38
Lab
  • 250AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 2Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 7inconsistent ontology term
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

260 results

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Clear Filters
ChIP-seq
single cell RNA-seq
MeRIP-seq
tissue
liver43
islet of Langerhans132
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
in vitro differentiated cells
adipocyte8
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm5
Hepatic endoderm2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
stem cell
hESC1
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