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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 978ChIP-seq
Assay category
  • 978DNA binding
Target of assay
  • 979histone modification
  • 978histone
  • 495narrow histone mark
  • 482broad histone mark
  • 260control
  • 153transcription factor
  • 49RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
Date released
  • 198August, 2017
  • 189October, 2019
  • 139May, 2021
  • 92May, 2019
  • 73November, 2017
  • 60April, 2019
  • 35May, 2024
  • 32September, 2018
  • 31December, 2017
  • 30October, 2018
  • 27May, 2020
  • 19June, 2019
  • 17August, 2021
  • 16February, 2018
  • 12October, 2017
  • 6January, 2019
  • 2March, 2020
Available data
  • 831bigWig
  • 815bed narrowPeak
  • 749bam
  • 371bigBed narrowPeak
  • 310tagAlign
  • 213fastq
  • 51bed broadPeak
  • 25bed bed3+
  • 16bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 972Homo sapiens
Biosample type
  • 627tissue
  • 237primary cell
  • 112in vitro differentiated cells
  • cell line
  • 2stem cell
Organ
  • 187brain
  • 132pancreas
  • 97heart
  • 84liver
  • 81epithelium
  • 78connective tissue
  • 71vasculature
  • 70blood vessel
  • 49limb
  • 33musculature of body
  • 32adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 12embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
  • 1pituitary gland
Project
  • 892AMP
  • 86T1D
Genome assembly (visualization)
  • 771GRCh38
  • 746hg19
Lab
  • 809AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
Audit category:
  • 21inconsistent ontology term
Audit category:
  • 53missing controlled_by
Audit category:
  • 20inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

978 results

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Clear Filters
ChIP-seq
tissue
liver64
islet of Langerhans51
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
hepatocyte12
pancreatic endoderm10
stem cell
hESC2
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