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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
654
ChIP-seq
Assay category
654
DNA binding
Target of assay
654
histone modification
653
histone
411
transcription factor
338
narrow histone mark
315
broad histone mark
271
control
89
RNA binding protein
89
recombinant protein
28
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
175
October, 2019
124
August, 2017
89
May, 2019
71
November, 2017
60
April, 2019
35
May, 2024
30
October, 2018
27
May, 2020
12
October, 2017
10
November, 2019
7
December, 2017
7
January, 2019
3
August, 2021
3
March, 2020
1
May, 2021
Available data
561
bigWig
557
bed narrowPeak
503
bam
332
bigBed narrowPeak
197
tagAlign
92
fastq
49
bed broadPeak
14
bed bed3+
bigBed broadPeak
1
tagAlign bed3+
Organism
648
Homo sapiens
Biosample type
628
tissue
primary cell
in vitro differentiated cells
24
cell line
2
stem cell
Organ
184
brain
95
heart
92
pancreas
74
liver
54
blood vessel
54
vasculature
49
limb
33
connective tissue
32
adipose tissue
25
musculature of body
24
nerve
20
artery
20
kidney
12
epithelium
6
spleen
4
gonad
4
ovary
2
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
650
AMP
4
T1D
Genome assembly (visualization)
516
GRCh38
463
hg19
Lab
616
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
3
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
primary cell
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
654 results
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Clear Filters
ChIP-seq
tissue
liver
65
islet of Langerhans
51
left cardiac atrium
35
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
+ See 100 more…
cell line
EndoC_BH1
12
Panc1
7
HepG2
4
GM12878
1
stem cell
hESC
2
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