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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
Assay category
141
DNA binding
Target of assay
371
transcription factor
275
histone
275
histone modification
141
broad histone mark
134
narrow histone mark
118
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
66
May, 2021
17
September, 2018
16
August, 2017
16
October, 2019
8
June, 2019
8
November, 2017
6
November, 2019
2
August, 2021
2
May, 2019
December, 2017
Available data
136
bigWig
129
bed narrowPeak
118
bam
57
tagAlign
41
fastq
31
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
1
bed bed3+
Organism
141
Homo sapiens
Biosample type
tissue
122
primary cell
in vitro differentiated cells
19
cell line
Organ
37
epithelium
37
pancreas
10
liver
9
blood vessel
9
vasculature
9
vein
5
kidney
4
connective tissue
4
musculature of body
Project
97
AMP
44
T1D
Genome assembly (visualization)
136
hg19
112
GRCh38
Lab
76
AMP-T2D consortium
64
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
tissue
files.file_type!
ibed
month_released!
December, 2017
BIOSAMPLE
ASSAY
141 results
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Clear Filters
ChIP-seq
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
20
pancreatic endocrine cell
11
endothelial cell of umbilical vein
9
pancreatic ductal cell
6
+ See 11 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
See all biosamples
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