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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
27
DNase-seq
21
snATAC-seq
6
ChIP-seq
4
Hi-C
2
pCHi-C
2
total RNA-seq
Assay category
54
Transcription
48
DNA accessibility
6
DNA binding
4
3D chromatin structure
Target of assay
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
1
control
Date released
54
May, 2022
24
June, 2019
19
September, 2020
4
July, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
October, 2019
1
November, 2020
Available data
937
bam
890
bigWig
612
bed narrowPeak
582
fastq
435
bigBed narrowPeak
251
tsv
120
tagAlign
107
bed broadPeak
107
bigBed broadPeak
73
zippedFastqFolder
41
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
4
hdf5
4
hic
4
tar
2
bed bed3
2
bedpe bed3+
2
csv
1
txt
1
vcf
Organism
114
Homo sapiens
Biosample type
tissue
110
primary cell
in vitro differentiated cells
3
stem cell
1
cell line
Organ
101
epithelium
pancreas
10
kidney
8
brain
8
connective tissue
8
vasculature
7
liver
6
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
Project
73
HPAP
41
AMP
Genome assembly (visualization)
34
hg19
33
GRCh38
Lab
73
Klaus Kaestner, Upenn
39
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
biosample_type!
in vitro differentiated cells
tissue
organ_slims!
pancreas
BIOSAMPLE
ASSAY
114 results
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single cell RNA-seq
DNase-seq
snATAC-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
primary cell
Langerhans cell
52
21
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
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stem cell
hESC
3
cell line
HepG2
1
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