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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
525
ChIP-seq
256
total RNA-seq
100
single cell RNA-seq
81
ATAC-seq
31
DNase-seq
5
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
GRO-seq
1
WGBS
Assay category
525
DNA binding
358
Transcription
113
DNA accessibility
5
3D chromatin structure
1
DNA methylation
Target of assay
365
transcription factor
266
histone
266
histone modification
135
broad histone mark
narrow histone mark
88
recombinant protein
72
RNA binding protein
31
chromatin remodeller
23
control
2
other context
2
other post-translational modification
Date released
267
November, 2017
125
May, 2021
90
May, 2020
85
February, 2021
57
November, 2018
57
September, 2018
48
July, 2018
43
April, 2018
36
June, 2019
32
October, 2019
27
December, 2018
24
August, 2017
22
July, 2019
21
August, 2021
19
January, 2019
8
November, 2019
7
August, 2020
6
March, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
May, 2019
3
September, 2020
2
January, 2018
2
October, 2018
1
December, 2017
Available data
1069
bam
1003
bigWig
791
fastq
575
bed narrowPeak
425
bigBed narrowPeak
393
tsv
153
zippedFastqFolder
94
bed broadPeak
94
bigBed broadPeak
68
tagAlign
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
1003
Homo sapiens
Biosample type
tissue
503
cell line
498
primary cell
in vitro differentiated cells
2
stem cell
Organ
332
liver
238
epithelium
208
pancreas
78
vasculature
74
blood vessel
64
heart
58
artery
54
blood
54
bodily fluid
32
kidney
28
connective tissue
17
brain
10
vein
8
embryo
7
musculature of body
2
adipose tissue
2
eye
1
pericardium
Project
851
AMP
142
T1D
10
HPAP
Genome assembly (visualization)
980
hg19
853
GRCh38
1
hg18
Lab
816
AMP-T2D consortium
165
Kyle Gaulton, UCSD
12
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
Audit category:
80
inconsistent ontology term
1
inconsistent control
Audit category:
32
missing controlled_by
Audit category:
22
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
tissue
month_released!
May, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1003 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
GRO-seq
WGBS
cell line
HepG2
317
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
53
1
EndoC_BH1
7
33
2
H1-hESC
8
+ See 7 more…
primary cell
monocyte
44
53
2
pancreatic alpha cell
3
10
12
13
pancreatic beta cell
3
10
12
10
CD8-positive, alpha-beta T cell
23
4
2
pancreatic acinar cell
4
4
12
5
+ See 73 more…
stem cell
hESC
1
1
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