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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
98
total RNA-seq
15
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
117
DNA binding
98
Transcription
8
DNA accessibility
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
185
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
Available data
215
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
243
Homo sapiens
Biosample type
238
primary cell
tissue
in vitro differentiated cells
5
cell line
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
connective tissue
Project
208
T1D
35
AMP
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
1108
AMP-T2D consortium
324
Klaus Kaestner, Upenn
243
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
biosample_type!
in vitro differentiated cells
tissue
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
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cell line
EndoC_BH1
3
2
See all biosamples
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