Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
total RNA-seq
107
ChIP-seq
91
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
6
Hi-C
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
Assay category
192
Transcription
111
DNA accessibility
107
DNA binding
47
DNA methylation
6
3D chromatin structure
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
26
control
6
RNA binding protein
6
transcription factor
3
nucleotide modification
Date released
80
May, 2022
61
September, 2018
38
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
21
May, 2021
20
June, 2019
19
September, 2020
16
November, 2019
July, 2019
7
August, 2020
6
August, 2021
6
March, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
288
bam
274
bigWig
238
fastq
146
tsv
121
bed narrowPeak
80
zippedFastqFolder
62
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
19
bed bed3+
6
hic
5
bedpe bed3+
4
tagAlign
3
cool
1
tar
Organism
471
Homo sapiens
Biosample type
393
primary cell
79
cell line
in vitro differentiated cells
tissue
Organ
472
epithelium
438
pancreas
413
liver
98
vasculature
93
blood vessel
74
heart
69
blood
69
bodily fluid
66
artery
48
kidney
32
connective tissue
22
vein
14
brain
11
musculature of body
8
embryo
4
eye
1
bone element
1
bone marrow
mammary gland
Project
316
AMP
152
HPAP
4
T1D
Genome assembly (visualization)
269
GRCh38
266
hg19
Lab
314
AMP-T2D consortium
152
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
85
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
in vitro differentiated cells
tissue
month_released!
July, 2019
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
472 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
35
12
31
1
pancreatic beta cell
21
13
23
12
16
1
pancreatic acinar cell
4
8
9
12
1
pancreatic ductal cell
4
13
4
10
endothelial cell of umbilical vein
17
2
2
1
+ See 17 more…
cell line
EndoC_BH1
33
15
19
1
6
2
1
glomerular visceral epithelial cell
1
1
See all biosamples
Download