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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
10
ATAC-seq
8
snATAC-seq
2
DNase-seq
1
RRBS
Assay category
53
DNA binding
20
DNA accessibility
1
DNA methylation
Target of assay
38
histone
38
histone modification
22
narrow histone mark
16
broad histone mark
13
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
324
November, 2017
227
May, 2021
148
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
64
October, 2019
62
November, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
August, 2021
48
July, 2018
43
April, 2018
31
July, 2019
28
December, 2018
23
January, 2019
16
March, 2020
16
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
March, 2023
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
December, 2017
3
June, 2018
2
January, 2018
2
October, 2018
Available data
65
fastq
58
bam
53
bigWig
33
bed narrowPeak
19
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
74
Homo sapiens
Biosample type
tissue
74
primary cell
in vitro differentiated cells
Organ
48
pancreas
36
epithelium
8
blood
8
bodily fluid
Project
59
AMP
8
T1D
7
HPAP
Genome assembly (visualization)
49
GRCh38
47
hg19
Lab
59
AMP-T2D consortium
8
Kyle Gaulton, UCSD
7
Klaus Kaestner, Upenn
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
tissue
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
RRBS
primary cell
pancreatic alpha cell
13
6
skeletal muscle myoblast
15
2
1
pancreatic beta cell
13
3
pancreatic endocrine cell
12
peripheral blood mononuclear cell
8
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