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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
4
WGBS
3
ATAC-seq
3
pCHi-C
3
total RNA-seq
1
RNA microarray
1
RRBS
Assay category
37
DNA binding
5
DNA methylation
3
DNA accessibility
3
Transcription
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
5
control
Date released
40
August, 2017
2
February, 2020
2
March, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
July, 2019
1
May, 2021
1
May, 2023
Available data
bam
513
bigWig
473
tsv
46
fastq
30
bed narrowPeak
25
bigBed narrowPeak
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
51
Homo sapiens
Biosample type
49
tissue
in vitro differentiated cells
2
primary cell
1
stem cell
Organ
256
pancreas
210
kidney
epithelium
182
heart
108
liver
93
bone element
54
eye
52
connective tissue
49
vasculature
48
adipose tissue
48
blood vessel
40
brain
39
artery
38
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
51
AMP
1
T1D
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
51
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
bam
bed bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
52 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
3
1
1
subcutaneous adipose tissue
1
1
islet of Langerhans
1
omental fat pad
1
primary cell
adult endothelial progenitor cell
1
cardiac fibroblast
1
stem cell
mesenchymal stem cell
1
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