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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
17
pCHi-C
16
ATAC-seq
4
total RNA-seq
1
DNAme array
Assay category
37
DNA binding
16
DNA accessibility
4
Transcription
1
DNA methylation
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
265
August, 2021
189
February, 2023
176
May, 2022
139
February, 2021
115
August, 2017
75
May, 2021
60
October, 2019
59
September, 2020
58
May, 2020
47
September, 2023
42
March, 2020
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
7
August, 2020
7
October, 2017
5
March, 2023
4
January, 2018
4
July, 2018
4
March, 2019
4
October, 2022
3
December, 2019
2
November, 2019
1
April, 2019
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
214
bigWig
bam
128
bed narrowPeak
94
tsv
84
tagAlign
2
bed bed3+
Organism
75
Homo sapiens
Biosample type
57
primary cell
in vitro differentiated cells
16
cell line
2
tissue
Organ
17
pancreas
16
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
58
AMP
17
T1D
Genome assembly (visualization)
35
hg19
Lab
53
Kyle Gaulton, UCSD
22
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
bam
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
pCHi-C
ATAC-seq
total RNA-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell
33
1
2
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
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